Glyma02g14910 - SoyBase

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Report for Sequence Feature Glyma02g14910

Feature Type:	gene_model
Chromosome:	Gm02
Start:	13436575
stop:	13440240
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g14910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G15620	AT	Annotation by Michelle Graham. TAIR10: nitrite reductase 1 \| chr2:6810552-6812666 FORWARD LENGTH=586	SoyBase	E_val: 0	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
GO:0047889	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ferredoxin-nitrate reductase activity	SoyBase	N/A	ISS
GO:0050421	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nitrite reductase (NO-forming) activity	SoyBase	N/A	ISS
GO:0051536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding	SoyBase	N/A	ISS
KOG0560	KOG	Sulfite reductase (ferredoxin)	JGI		ISS
PTHR11493	Panther	DIHYDROLIPOAMIDE DEHYDROGENASE-RELATED	JGI		ISS
PTHR11493:SF37	Panther	NADH OXIDASE	JGI		ISS
PF01077	PFAM	Nitrite and sulphite reductase 4Fe-4S domain	JGI		ISS
PF03460	PFAM	Nitrite/Sulfite reductase ferredoxin-like half domain	JGI		ISS
UniRef100_I1JET9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JET9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O04840	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nitrite reductase n=1 Tax=Glycine max RepID=O04840_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g14910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g14910

Paralog	Evidence	Comments
Glyma07g33570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g14910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g132100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g14910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g14910

Limit To All Plant Sequences

>Glyma02g14910.1   sequence type=CDS   gene model=Glyma02g14910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACACGTTCCTTCTTCTTCTTCCAATAATGTCTTCTTCATTCTCTGTTCGTTTTCTTGCTCCTCTTCCTCCATCATCATCATCATGCTTCCCCACCAGCTCTCTGCCGAAGACATGGCTCTGCGCCGCCGCCACCCCAACGGTGGCTCCGTCAACCACCACCTCCTCCTCGGAGGTGGAGGCTTCCAGGTTGGAGCCTAGAGTGGAGGAGAGAGATGGGTTCTGGGTTTTAAAGGAAGAGTACAGGGGAGGCATCAGCCCTCAGGAGAAAGTGAAGCTTGAGAAAGATCCCATGAAGCTTTTCATGGAAGGTGGGATTGAGGAATTGGCTAAGATGTCCCTTGAAGAAATTGAGAGCTCCAAGCACACCAAGGATGATATTGATGTTAGACTCAAGTGGCTTGGCCTTTTTCATAGGAGAAAGCAGCATCATGGTAGATTTATGATGAGGCTGAAGCTTCCAAATGGGGTGACAACAAGTGCCCAAACACGATACTTGGCTAGTGTGATAAGGAAATACGGAAAAGATGGGTGTGCTGATGTAACAACGAGGCAGAATTGGCAAATTCGTGGTGTGGTGCTACCTGATGTGCCAGAAATTCTAAAGGGCCTCGACGAGGTTGGATTGACTAGTCTTCAGAGTGGAATGGACAATGTGAGAAATCCTGTTGGTAACCCTCTTGCAGGCATTGACCCTGATGAGATTGTTGACACTCGACCATACAACAACTTGTTATCTCAATTCATCACTGCCAATTCACGTGGCAACCCCGCCATGTCAAACTTGCCTAGGAAGTGGAATGTGTGTGTGGTTGGATCCCATGATCTGTTTGAGCATCCACACATCAATGATCTGGCTTACATGCCTGCAAACAAGGATGGTCGTTTTGGATTCAACTTACTTGTTGGTGGTTTCTTCAGTGCCAAGAGATGTGCTGAAGCAATTCCACTTGATGCATGGGTCTCCGCAGATGATGTAATCCCACTTTGTAAAGCTGTCCTTGAGGCCTATAGGGACCTTGGCTTCAGAGGGAACAGACAGAAAACAAGAATGATGTGGTTGATTGACGAATTGGGGATAGAAGTATTCAGGTCAGAGGTGGAGAAAAGAATGCCAGGGAAGAAGCTGGAGAGAGCATCTAAGGAAGAACTGGTTAAGAAACAATGGGAAAGAAGAGACTACTTAGGTGTTCATCCACAGAAACAAGAGGGCCTAAGCTATGTTGGGATTCACATTCCAGTTGGTAGAGTCCAAGCAGATGACATGGATGAGTTGGCTCGTTTAGCCGACGAATACGCCACCGGTGAGCTCAGGCTCACAGTGGAGCAGAACATTATAATCCCAAATGTGGACAATAACAAAATTGATGGCTTGCTCAATGAGCCTCTCTTGAAGGGGAGATTCTCACCCGAACCTTCTCTATTGATGAAGACTCTGGTGGCATGCACTGGTAATCAATTTTGTGGACAAGCTATAATTGAGACAAAGGAAAGGGCATTGAAAGTGACTGAGGAAGTGGAGAGGCAAGTGGCTGTGACTAGGCCTGTGAGAATGCATTGGACTGGCTGCCCTAACACTTGTGGACAGGTTCAAGTTGCTGACATTGGTTTCATGGGGTGCATGGCTAGGGATGACAATGGTAAGGCCACTGAAGGTGTGGATATTTTCCTTGGAGGGAGAATTGGAAGTGATTCACATCTGGCTCAAGTGTATAAGAAGGGTGTGCCTTGCAAGGACTTGGTGCCTGTTGTGGTAGACATACTAGTAAAACACTTTGGAGCTGTCCTAAGGAATAGAGAGGAAGGGGAAGATTAA

Predicted protein sequences of Glyma02g14910

Limit To All Plant Sequences

>Glyma02g14910.1   sequence type=predicted peptide   gene model=Glyma02g14910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTFLLLLPIMSSSFSVRFLAPLPPSSSSCFPTSSLPKTWLCAAATPTVAPSTTTSSSEVEASRLEPRVEERDGFWVLKEEYRGGISPQEKVKLEKDPMKLFMEGGIEELAKMSLEEIESSKHTKDDIDVRLKWLGLFHRRKQHHGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLDEVGLTSLQSGMDNVRNPVGNPLAGIDPDEIVDTRPYNNLLSQFITANSRGNPAMSNLPRKWNVCVVGSHDLFEHPHINDLAYMPANKDGRFGFNLLVGGFFSAKRCAEAIPLDAWVSADDVIPLCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEVFRSEVEKRMPGKKLERASKEELVKKQWERRDYLGVHPQKQEGLSYVGIHIPVGRVQADDMDELARLADEYATGELRLTVEQNIIIPNVDNNKIDGLLNEPLLKGRFSPEPSLLMKTLVACTGNQFCGQAIIETKERALKVTEEVERQVAVTRPVRMHWTGCPNTCGQVQVADIGFMGCMARDDNGKATEGVDIFLGGRIGSDSHLAQVYKKGVPCKDLVPVVVDILVKHFGAVLRNREEGED*

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